MRC2 Publications

Author Title Type [ Year(Asc)]
Piert M, Montgomery J, Kunju LPriya, Siddiqui J, Rogers V, Rajendiran T, Johnson TD, Shao X, Davenport MS.  2016.  18F-Choline PET/MRI: The Additional Value of PET for MRI-Guided Transrectal Prostate Biopsies.. J Nucl Med.
Obi AT, Stringer KA, Diaz JA, Finkel MA, Farris DM, Yeomans L, Wakefield T, Myers DD.  2016.  1D-¹H-nuclear magnetic resonance metabolomics reveals age-related changes in metabolites associated with experimental venous thrombosis.. J Vasc Surg Venous Lymphat Disord. 4(2):221-30.
Turcu AF, Nanba AT, Chomic R, Upadhyay SK, Giordano TJ, Shields JJ, Merke DP, Rainey WE, Auchus RJ.  2016.  Adrenal-derived 11-oxygenated 19-carbon steroids are the dominant androgens in classic 21-hydroxylase deficiency.. Eur J Endocrinol. 174(5):601-9.
Demehri FR, Frykman PK, Cheng Z, Ruan C, Wester T, Nordenskjöld A, Kawaguchi A, Hui TT, Granström AL, Funari V et al..  2016.  Altered fecal short chain fatty acid composition in children with a history of Hirschsprung-associated enterocolitis.. J Pediatr Surg. 51(1):81-6.
Wang W, Kryczek I, Dostál L, Lin H, Tan L, Zhao L, Lu F, Wei S, Maj T, Peng D et al..  2016.  Effector T Cells Abrogate Stroma-Mediated Chemoresistance in Ovarian Cancer.. Cell. 165(5):1092-105.
Wernisch S, Pennathur S.  2016.  Evaluation of coverage, retention patterns, and selectivity of seven liquid chromatographic methods for metabolomics.. Anal Bioanal Chem. 408(22):6079-91.
Moore SM, Hess SM, Jorgenson JW.  2016.  Extraction, Enrichment, Solubilization, and Digestion Techniques for Membrane Proteomics.. J Proteome Res. 15(4):1243-52.
Kochen MA, Chambers MC, Holman JD, Nesvizhskii AI, Weintraub ST, Belisle JT, M Islam N, Griss J, Tabb DL.  2016.  Greazy: Open-Source Software for Automated Phospholipid Tandem Mass Spectrometry Identification.. Anal Chem. 88(11):5733-41.
Mathewson ND, Jenq R, Mathew AV, Koenigsknecht M, Hanash A, Toubai T, Oravecz-Wilson K, Wu S-R, Sun Y, Rossi C et al..  2016.  Gut microbiome-derived metabolites modulate intestinal epithelial cell damage and mitigate graft-versus-host disease.. Nat Immunol. 17(5):505-13.
Sondhi V, Owen BM, Liu J, Chomic R, Kliewer SA, Hughes BA, Arlt W, Mangelsdorf DJ, Auchus RJ.  2016.  Impaired 17,20-Lyase Activity in Male Mice Lacking Cytochrome b5 in Leydig Cells.. Mol Endocrinol. 30(4):469-78.
Sud M, Fahy E, Cotter D, Azam K, Vadivelu I, Burant C, Edison A, Fiehn O, Higashi R, K Nair S et al..  2016.  Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools.. Nucleic Acids Res. 44(D1):D463-70.
Pennathur S, Vivekanandan-Giri A, Locy ML, Kulkarni T, Zhi D, Zeng L, Byun J, de Andrade JA, Thannickal VJ.  2016.  Oxidative Modifications of Protein Tyrosyl Residues Are Increased in Plasma of Human Subjects with Interstitial Lung Disease.. Am J Respir Crit Care Med. 193(8):861-8.
Sousa CM, Biancur DE, Wang X, Halbrook CJ, Sherman MH, Zhang L, Kremer D, Hwang RF, Witkiewicz AK, Ying H et al..  2016.  Pancreatic stellate cells support tumour metabolism through autophagic alanine secretion.. Nature. 536(7617):479-83.
Visovatti SH, Hyman MC, Goonewardena SN, Anyanwu AC, Kanthi Y, Robichaud P, Wang J, Petrovic-Djergovic D, Rattan R, Burant CF et al..  2016.  Purinergic dysregulation in pulmonary hypertension.. Am J Physiol Heart Circ Physiol. :ajpheart.00572.2015.
Wynn ML, Yates JA, Evans CR, Van Wassenhove L, Wu ZFen, Bridges S, Bao L, Fournier C, Ashrafzadeh S, Merrins MJ et al..  2016.  RhoC is a Potent Regulator of Glutamine Metabolism and N-acetylaspartate Production in Inflammatory Breast Cancer Cells.. J Biol Chem.
Lee J, Ellis JM, Wolfgang MJ.  2015.  Adipose fatty acid oxidation is required for thermogenesis and potentiates oxidative stress-induced inflammation.. Cell Rep. 10(2):266-79.
Mathew AV, E Seymour M, Byun J, Pennathur S, Hummel SL.  2015.  Altered Metabolic Profile With Sodium-Restricted Dietary Approaches to Stop Hypertension Diet in Hypertensive Heart Failure With Preserved Ejection Fraction.. J Card Fail. 21(12):963-7.
Saito Y, Chapple RH, Lin A, Kitano A, Nakada D.  2015.  AMPK Protects Leukemia-Initiating Cells in Myeloid Leukemias from Metabolic Stress in the Bone Marrow.. Cell Stem Cell. 17(5):585-96.
Okamura DM, Pennathur S.  2015.  The balance of powers: Redox regulation of fibrogenic pathways in kidney injury.. Redox Biol. 6:495-504.
Noori S, McNamara P, Jain A, Lavoie PM, Wickremasinghe A, Merritt TA, Solomon T, Sekar K, Attridge JT, Swanson JR et al..  2015.  Catecholamine-resistant hypotension and myocardial performance following patent ductus arteriosus ligation.. J Perinatol. 35(2):123-7.
Reed S, Neuman H, Moscovich S, Glahn RP, Koren O, Tako E.  2015.  Chronic Zinc Deficiency Alters Chick Gut Microbiota Composition and Function.. Nutrients. 7(12):9768-84.
Scher JU, Ubeda C, Artacho A, Attur M, Isaac S, Reddy SM, Marmon S, Neimann A, Brusca S, Patel T et al..  2015.  Decreased bacterial diversity characterizes the altered gut microbiota in patients with psoriatic arthritis, resembling dysbiosis in inflammatory bowel disease.. Arthritis Rheumatol. 67(1):128-39.
B Salloum A, Veiga-Lopez A, Abbott DH, Burant CF, Padmanabhan V.  2015.  Developmental programming: exposure to testosterone excess disrupts steroidal and metabolic environment in pregnant sheep.. Endocrinology. 156(6):2323-37.
Tsou C-C, Avtonomov D, Larsen B, Tucholska M, Choi H, Gingras A-C, Nesvizhskii AI.  2015.  DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics.. Nat Methods. 12(3):258-64,7pfollowing264.
Chassaing B, Koren O, Goodrich JK, Poole AC, Srinivasan S, Ley RE, Gewirtz AT.  2015.  Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome.. Nature. 519(7541):92-6.
Meng Z-X, Wang L, Chang L, Sun J, Bao J, Li Y, Y Chen E, Lin JD.  2015.  A Diet-Sensitive BAF60a-Mediated Pathway Links Hepatic Bile Acid Metabolism to Cholesterol Absorption and Atherosclerosis.. Cell Rep. 13(8):1658-69.
Koenigsknecht MJ, Theriot CM, Bergin IL, Schumacher CA, Schloss PD, Young VB.  2015.  Dynamics and establishment of Clostridium difficile infection in the murine gastrointestinal tract.. Infect Immun. 83(3):934-41.
Mell B, Jala VR, Mathew AV, Byun J, Waghulde H, Zhang Y, Haribabu B, Vijay-Kumar M, Pennathur S, Joe B.  2015.  Evidence for a link between gut microbiota and hypertension in the Dahl rat.. Physiol Genomics. 47(6):187-97.
O-Sullivan IS, Zhang W, Wasserman DH, Liew CWee, Liu J, Paik J, DePinho RA, Stolz DBeer, C Kahn R, Schwartz MW et al..  2015.  FoxO1 integrates direct and indirect effects of insulin on hepatic glucose production and glucose utilization.. Nat Commun. 6:7079.
Hochberg I, Harvey I, Tran QT, Stephenson EJ, Barkan AL, Saltiel AR, Chandler WF, Bridges D.  2015.  Gene expression changes in subcutaneous adipose tissue due to Cushing's disease.. J Mol Endocrinol. 55(2):81-94.
Hochberg I, Tran QT, Barkan AL, Saltiel AR, Chandler WF, Bridges D.  2015.  Gene Expression Signature in Adipose Tissue of Acromegaly Patients.. PLoS One. 10(6):e0129359.
Overmyer KA, Thonusin C, Qi NR, Burant CF, Evans CR.  2015.  Impact of anesthesia and euthanasia on metabolomics of mammalian tissues: studies in a C57BL/6J mouse model.. PLoS One. 10(2):e0117232.
Veiga-Lopez A, Pennathur S, Kannan K, Patisaul HB, Dolinoy DC, Zeng L, Padmanabhan V.  2015.  Impact of gestational bisphenol A on oxidative stress and free fatty acids: Human association and interspecies animal testing studies.. Endocrinology. 156(3):911-22.
Zhao J, Evans CR, Carmody LA, LiPuma JJ.  2015.  Impact of storage conditions on metabolite profiles of sputum samples from persons with cystic fibrosis.. J Cyst Fibros. 14(4):468-73.
Lin F, Ferguson KL, Boyer DR, Lin XNina, E Marsh NG.  2015.  Isofunctional enzymes PAD1 and UbiX catalyze formation of a novel cofactor required by ferulic acid decarboxylase and 4-hydroxy-3-polyprenylbenzoic acid decarboxylase.. ACS Chem Biol. 10(4):1137-44.
Pennathur S, Pasichnyk K, Bahrami NM, Zeng L, Febbraio M, Yamaguchi I, Okamura DM.  2015.  The macrophage phagocytic receptor CD36 promotes fibrogenic pathways on removal of apoptotic cells during chronic kidney injury.. Am J Pathol. 185(8):2232-45.
Overmyer KA, Evans CR, Qi NR, Minogue CE, Carson JJ, Chermside-Scabbo CJ, Koch LG, Britton SL, Pagliarini DJ, Coon JJ et al..  2015.  Maximal oxidative capacity during exercise is associated with skeletal muscle fuel selection and dynamic changes in mitochondrial protein acetylation.. Cell Metab. 21(3):468-78.
Shaeib F, Khan SN, Ali I, Najafi T, Maitra D, Abdulhamid I, Saed GM, Pennathur S, Abu-Soud HM.  2015.  Melatonin prevents myeloperoxidase heme destruction and the generation of free iron mediated by self-generated hypochlorous acid.. PLoS One. 10(3):e0120737.
Mathew AV, Zeng L, Byun J, Pennathur S.  2015.  Metabolomic Profiling of Arginine Metabolome Links Altered Methylation to Chronic Kidney Disease Accelerated Atherosclerosis.. J Proteomics Bioinform. Suppl 14
ElAzzouny MA, Evans CR, Burant CF, Kennedy RT.  2015.  Metabolomics Analysis Reveals that AICAR Affects Glycerolipid, Ceramide and Nucleotide Synthesis Pathways in INS-1 Cells.. PLoS One. 10(6):e0129029.
Sas KM, Karnovsky A, Michailidis G, Pennathur S.  2015.  Metabolomics and diabetes: analytical and computational approaches.. Diabetes. 64(3):718-32.
Guo Y, Fan Y, Zhang J, Lomberk GA, Zhou Z, Sun L, Mathison AJ, Garcia-Barrio MT, Zhang J, Zeng L et al..  2015.  Perhexiline activates KLF14 and reduces atherosclerosis by modulating ApoA-I production.. J Clin Invest. 125(10):3819-30.
Puskarich MA, Finkel MA, Karnovsky A, Jones AE, Trexel J, Harris BN, Stringer KA.  2015.  Pharmacometabolomics of l-carnitine treatment response phenotypes in patients with septic shock.. Ann Am Thorac Soc. 12(1):46-56.
Evans SJ, Assari S, Harrington GJ, Chang Y-W, Burant CF, McInnis MG.  2015.  Plasma linoleic acid partially mediates the association of bipolar disorder on self-reported mental health scales.. J Psychiatr Res. 68:61-7.
Yoh SM, Schneider M, Seifried J, Soonthornvacharin S, Akleh RE, Olivieri KC, De Jesus PD, Ruan C, de Castro E, Ruiz PA et al..  2015.  PQBP1 Is a Proximal Sensor of the cGAS-Dependent Innate Response to HIV-1.. Cell. 161(6):1293-305.
Turcu AF, Rege J, Chomic R, Liu J, Nishimoto HK, Else T, Moraitis AG, Palapattu GS, Rainey WE, Auchus RJ.  2015.  Profiles of 21-Carbon Steroids in 21-hydroxylase Deficiency.. J Clin Endocrinol Metab. 100(6):2283-90.
Gao X-H, Krokowski D, Guan B-J, Bederman I, Majumder M, Parisien M, Diatchenko L, Kabil O, Willard B, Banerjee R et al..  2015.  Quantitative H2S-mediated protein sulfhydration reveals metabolic reprogramming during the integrated stress response.. Elife. 4:e10067.
Hu B, Liu J, Wu Z, Liu T, Ullenbruch MR, Ding L, Henke CA, Bitterman PB, Phan SH.  2015.  Reemergence of hedgehog mediates epithelial-mesenchymal crosstalk in pulmonary fibrosis.. Am J Respir Cell Mol Biol. 52(4):418-28.
Byrd JB, Rothberg AE, Chomic R, Burant CF, Brook RD, Auchus RJ.  2015.  Serum Cortisol-to-Cortisone Ratio and Blood Pressure in Severe Obesity before and after Weight Loss.. Cardiorenal Med. 6(1):1-7.
Sas KM, Nair V, Byun J, Kayampilly P, Zhang H, Saha J, Brosius FC, Kretzler M, Pennathur S.  2015.  Targeted Lipidomic and Transcriptomic Analysis Identifies Dysregulated Renal Ceramide Metabolism in a Mouse Model of Diabetic Kidney Disease.. J Proteomics Bioinform. Suppl 14